STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS10739Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (538 aa)    
Predicted Functional Partners:
NBR_LOCUS7836
RNA-binding protein NOB1 (inferred by orthology to a human protein).
   
 0.993
NBR_LOCUS18797
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.982
NBR_LOCUS9480
40S ribosomal protein S3 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uS3 family.
   
 0.981
NBR_LOCUS7769
40S ribosomal protein S15 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uS19 family.
    
 0.977
NBR_LOCUS13473
Protein LTV1 homolog (inferred by orthology to a C. elegans protein).
   
 0.974
NBR_LOCUS14046
RNA-binding protein pno-1 (inferred by orthology to a C. elegans protein).
   
 0.959
NBR_LOCUS7220
GRIP domain-containing protein.
   
 0.959
NBR_LOCUS548
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.956
inx-19
Innexin; Structural component of the gap junctions. Belongs to the pannexin family.
    
  0.944
NBR_LOCUS18213
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.943
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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