STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS11904U5 small nuclear ribonucleoprotein 40 kDa protein (inferred by orthology to a human protein). (602 aa)    
Predicted Functional Partners:
NBR_LOCUS11889
Probable small nuclear ribonucleoprotein F (inferred by orthology to a C. elegans protein); Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.997
NBR_LOCUS12091
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.996
NBR_LOCUS13521
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.995
NBR_LOCUS14036
Small nuclear ribonucleoprotein G.
   
  0.992
NBR_LOCUS10589
Pre-mRNA-processing factor 6 (inferred by orthology to a human protein).
   
 0.991
NBR_LOCUS19696
Pre-mRNA-processing factor 6 (inferred by orthology to a human protein).
   
 0.991
NBR_LOCUS10687
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.990
NBR_LOCUS10689
PID domain-containing protein.
   
 0.990
NBR_LOCUS11783
Sm domain-containing protein.
   
 0.990
NBR_LOCUS19608
Small nuclear ribonucleoprotein Sm D2.
   
 0.990
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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