STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS13819Homeobox protein engrailed-like ceh-16 (inferred by orthology to a C. elegans protein). (113 aa)    
Predicted Functional Partners:
NBR_LOCUS11975
Transcription factor unc-37 (inferred by orthology to a C. elegans protein).
    
 
 0.953
NBR_LOCUS5718
LIM/homeobox protein ttx-3 (inferred by orthology to a C. elegans protein).
   
 0.779
NBR_LOCUS9273
CeLIM-7 (inferred by orthology to a C. elegans protein).
   
 0.771
NBR_LOCUS6147
Uncharacterized protein.
   
 0.768
NBR_LOCUS10035
Rhombotin-2 (inferred by orthology to a human protein).
   
 0.755
NBR_LOCUS5869
LIM/homeobox protein Awh (inferred by orthology to a D. melanogaster protein).
   
 0.711
NBR_LOCUS8485
Homeobox protein NOBOX (inferred by orthology to a human protein).
   
 0.711
NBR_LOCUS9501
Uncharacterized protein.
   
 0.711
NBR_LOCUS9870
Mechanosensory protein 3 (inferred by orthology to a C. elegans protein).
   
 0.711
NBR_LOCUS13950
Homeobox protein ceh-8 (inferred by orthology to a C. elegans protein).
   
0.711
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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