STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS15001Uncharacterized protein. (502 aa)    
Predicted Functional Partners:
NBR_LOCUS16892
Signal transducing adapter molecule 1 (inferred by orthology to a C. elegans protein).
   
0.998
NBR_LOCUS12165
Tumor susceptibility gene 101 protein (inferred by orthology to a human protein).
    
 0.990
NBR_LOCUS17097
Ubiquitin-40S ribosomal protein S27a (inferred by orthology to a human protein).
    
 0.980
NBR_LOCUS18797
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.976
NBR_LOCUS13486
Uncharacterized protein.
   
 0.969
NBR_LOCUS13891
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.969
NBR_LOCUS19357
DH domain-containing protein.
    
 0.953
NBR_LOCUS8115
Ubiquitin carboxyl-terminal hydrolase.
   
 0.901
NBR_LOCUS338
Ubiquitin-60S ribosomal protein L40 (inferred by orthology to a C. elegans protein).
    
  0.891
NBR_LOCUS21626
Uncharacterized protein; Belongs to the VPS28 family.
    
 0.891
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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