STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS15677Uncharacterized protein. (99 aa)    
Predicted Functional Partners:
NBR_LOCUS10570
Uncharacterized protein.
    
 0.884
NBR_LOCUS10571
Uncharacterized protein.
    
 0.884
NBR_LOCUS231
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
     
 0.727
NBR_LOCUS7414
Ras-related protein Rab-7a (inferred by orthology to a human protein).
    
 0.694
NBR_LOCUS7889
SAP domain-containing protein.
   
 
 0.661
NBR_LOCUS3335
Xanthine dehydrogenase (inferred by orthology to a D. melanogaster protein).
    
 0.630
NBR_LOCUS8742
Amidase domain-containing protein.
    
 0.630
NBR_LOCUS9031
Xanthine dehydrogenase (inferred by orthology to a D. melanogaster protein).
    
 0.630
NBR_LOCUS16924
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
     
 0.625
NBR_LOCUS8216
Molybdenum cofactor sulfurase (inferred by orthology to a C. elegans protein).
    
 0.619
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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