NBR_LOCUS17180 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS17180

2',5'-phosphodiesterase 12 (inferred by orthology to a human protein). (339 aa)

Predicted Functional Partners:

NBR_LOCUS11153

0.987

NBR_LOCUS14396

0.987

NBR_LOCUS9792

0.986

NBR_LOCUS13821

0.986

NBR_LOCUS4422

0.981

NBR_LOCUS22258

0.981

NBR_LOCUS18729

0.961

NBR_LOCUS19839

0.961

NBR_LOCUS11688

0.937

NBR_LOCUS20366

0.929

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS11153	NBR_LOCUS13821	A0A0N4Y5A4	A0A158R1H5	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	CCR4-NOT transcription complex subunit 3 (inferred by orthology to a human protein).	0.999
NBR_LOCUS11153	NBR_LOCUS14396	A0A0N4Y5A4	A0A158R1T4	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	CCR4-NOT transcription complex subunit 4 (inferred by orthology to a human protein).	0.999
NBR_LOCUS11153	NBR_LOCUS17180	A0A0N4Y5A4	A0A0N4YJM6	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	2',5'-phosphodiesterase 12 (inferred by orthology to a human protein).	0.987
NBR_LOCUS11153	NBR_LOCUS18729	A0A0N4Y5A4	A0A0N4YNC2	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	ATP-dependent RNA helicase cgh-1 (inferred by orthology to a C. elegans protein); Belongs to the DEAD box helicase family.	0.636
NBR_LOCUS11153	NBR_LOCUS19839	A0A0N4Y5A4	A0A0N4YRG8	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	ATP-dependent RNA helicase cgh-1 (inferred by orthology to a C. elegans protein); Belongs to the DEAD box helicase family.	0.636
NBR_LOCUS11153	NBR_LOCUS22258	A0A0N4Y5A4	A0A0N4YYD5	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	CCR4-NOT transcription complex subunit 7 (inferred by orthology to a C. elegans protein).	0.994
NBR_LOCUS11153	NBR_LOCUS4422	A0A0N4Y5A4	A0A0N4XPG9	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	CCR4-NOT transcription complex subunit 7 (inferred by orthology to a C. elegans protein).	0.994
NBR_LOCUS11153	NBR_LOCUS9792	A0A0N4Y5A4	A0A0N4Y277	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	CCR4-NOT transcription complex subunit 2 (inferred by orthology to a human protein).	0.999
NBR_LOCUS11688	NBR_LOCUS13821	A0A0N4Y6H7	A0A158R1H5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CCR4-NOT transcription complex subunit 3 (inferred by orthology to a human protein).	0.954
NBR_LOCUS11688	NBR_LOCUS17180	A0A0N4Y6H7	A0A0N4YJM6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	2',5'-phosphodiesterase 12 (inferred by orthology to a human protein).	0.937
NBR_LOCUS11688	NBR_LOCUS18729	A0A0N4Y6H7	A0A0N4YNC2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ATP-dependent RNA helicase cgh-1 (inferred by orthology to a C. elegans protein); Belongs to the DEAD box helicase family.	0.956
NBR_LOCUS11688	NBR_LOCUS19839	A0A0N4Y6H7	A0A0N4YRG8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ATP-dependent RNA helicase cgh-1 (inferred by orthology to a C. elegans protein); Belongs to the DEAD box helicase family.	0.956
NBR_LOCUS11688	NBR_LOCUS20366	A0A0N4Y6H7	A0A0N4YSZ3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II-associated factor 1 homolog (inferred by orthology to a C. elegans protein).	0.953
NBR_LOCUS11688	NBR_LOCUS22258	A0A0N4Y6H7	A0A0N4YYD5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CCR4-NOT transcription complex subunit 7 (inferred by orthology to a C. elegans protein).	0.948
NBR_LOCUS11688	NBR_LOCUS4422	A0A0N4Y6H7	A0A0N4XPG9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CCR4-NOT transcription complex subunit 7 (inferred by orthology to a C. elegans protein).	0.948
NBR_LOCUS11688	NBR_LOCUS9792	A0A0N4Y6H7	A0A0N4Y277	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CCR4-NOT transcription complex subunit 2 (inferred by orthology to a human protein).	0.952
NBR_LOCUS13821	NBR_LOCUS11153	A0A158R1H5	A0A0N4Y5A4	CCR4-NOT transcription complex subunit 3 (inferred by orthology to a human protein).	Cell differentiation protein RCD1 homolog (inferred by orthology to a human protein).	0.999
NBR_LOCUS13821	NBR_LOCUS11688	A0A158R1H5	A0A0N4Y6H7	CCR4-NOT transcription complex subunit 3 (inferred by orthology to a human protein).	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.954
NBR_LOCUS13821	NBR_LOCUS14396	A0A158R1H5	A0A158R1T4	CCR4-NOT transcription complex subunit 3 (inferred by orthology to a human protein).	CCR4-NOT transcription complex subunit 4 (inferred by orthology to a human protein).	0.997
NBR_LOCUS13821	NBR_LOCUS17180	A0A158R1H5	A0A0N4YJM6	CCR4-NOT transcription complex subunit 3 (inferred by orthology to a human protein).	2',5'-phosphodiesterase 12 (inferred by orthology to a human protein).	0.986