NBR_LOCUS20124 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS20124

Uncharacterized protein. (351 aa)

Predicted Functional Partners:

NBR_LOCUS4946

0.936

NBR_LOCUS20896

0.936

NBR_LOCUS13127

0.805

NBR_LOCUS10250

0.795

NBR_LOCUS2497

0.766

NBR_LOCUS13125

0.766

NBR_LOCUS6862

0.712

NBR_LOCUS13341

0.704

NBR_LOCUS8387

0.693

NBR_LOCUS14923

0.678

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS10250	NBR_LOCUS14923	A0A3P7AHF1	A0A0N4YE31	HORMA domain-containing protein.	MDF-1 (inferred by orthology to a C. elegans protein).	0.998
NBR_LOCUS10250	NBR_LOCUS20124	A0A3P7AHF1	A0A0N4YSA1	HORMA domain-containing protein.	Uncharacterized protein.	0.795
NBR_LOCUS10250	NBR_LOCUS20896	A0A3P7AHF1	A0A0N4YUH3	HORMA domain-containing protein.	Tubulin-specific chaperone E (inferred by orthology to a human protein).	0.422
NBR_LOCUS10250	NBR_LOCUS4946	A0A3P7AHF1	A0A0N4XQZ3	HORMA domain-containing protein.	Tubulin-specific chaperone E (inferred by orthology to a human protein).	0.422
NBR_LOCUS13125	NBR_LOCUS20124	A0A0N4Y9V3	A0A0N4YSA1	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	Uncharacterized protein.	0.766
NBR_LOCUS13127	NBR_LOCUS20124	A0A0N4Y9V4	A0A0N4YSA1	ATP synthase mitochondrial F1 complex assembly factor 2 (inferred by orthology to a human protein).	Uncharacterized protein.	0.805
NBR_LOCUS13341	NBR_LOCUS20124	A0A0N4YAD2	A0A0N4YSA1	Tubulin-specific chaperone B (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.704
NBR_LOCUS13341	NBR_LOCUS20896	A0A0N4YAD2	A0A0N4YUH3	Tubulin-specific chaperone B (inferred by orthology to a C. elegans protein).	Tubulin-specific chaperone E (inferred by orthology to a human protein).	0.753
NBR_LOCUS13341	NBR_LOCUS4946	A0A0N4YAD2	A0A0N4XQZ3	Tubulin-specific chaperone B (inferred by orthology to a C. elegans protein).	Tubulin-specific chaperone E (inferred by orthology to a human protein).	0.753
NBR_LOCUS13341	NBR_LOCUS6862	A0A0N4YAD2	A0A158QXH6	Tubulin-specific chaperone B (inferred by orthology to a C. elegans protein).	C-CAP/cofactor C-like domain-containing protein.	0.549
NBR_LOCUS13341	NBR_LOCUS8387	A0A0N4YAD2	A0A0N4XZ23	Tubulin-specific chaperone B (inferred by orthology to a C. elegans protein).	Tubulin-specific chaperone A; Belongs to the TBCA family.	0.626
NBR_LOCUS14923	NBR_LOCUS10250	A0A0N4YE31	A0A3P7AHF1	MDF-1 (inferred by orthology to a C. elegans protein).	HORMA domain-containing protein.	0.998
NBR_LOCUS14923	NBR_LOCUS20124	A0A0N4YE31	A0A0N4YSA1	MDF-1 (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.678
NBR_LOCUS14923	NBR_LOCUS20896	A0A0N4YE31	A0A0N4YUH3	MDF-1 (inferred by orthology to a C. elegans protein).	Tubulin-specific chaperone E (inferred by orthology to a human protein).	0.439
NBR_LOCUS14923	NBR_LOCUS4946	A0A0N4YE31	A0A0N4XQZ3	MDF-1 (inferred by orthology to a C. elegans protein).	Tubulin-specific chaperone E (inferred by orthology to a human protein).	0.439
NBR_LOCUS20124	NBR_LOCUS10250	A0A0N4YSA1	A0A3P7AHF1	Uncharacterized protein.	HORMA domain-containing protein.	0.795
NBR_LOCUS20124	NBR_LOCUS13125	A0A0N4YSA1	A0A0N4Y9V3	Uncharacterized protein.	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	0.766
NBR_LOCUS20124	NBR_LOCUS13127	A0A0N4YSA1	A0A0N4Y9V4	Uncharacterized protein.	ATP synthase mitochondrial F1 complex assembly factor 2 (inferred by orthology to a human protein).	0.805
NBR_LOCUS20124	NBR_LOCUS13341	A0A0N4YSA1	A0A0N4YAD2	Uncharacterized protein.	Tubulin-specific chaperone B (inferred by orthology to a C. elegans protein).	0.704
NBR_LOCUS20124	NBR_LOCUS14923	A0A0N4YSA1	A0A0N4YE31	Uncharacterized protein.	MDF-1 (inferred by orthology to a C. elegans protein).	0.678