NBR_LOCUS20993 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS20993

CBFD_NFYB_HMF domain-containing protein. (100 aa)

Predicted Functional Partners:

NBR_LOCUS299

0.994

NBR_LOCUS10316

0.994

NBR_LOCUS14259

0.985

NBR_LOCUS15077

0.985

NBR_LOCUS1914

0.985

NBR_LOCUS8071

0.963

NBR_LOCUS8697

0.963

NBR_LOCUS21126

0.963

NBR_LOCUS7826

0.962

NBR_LOCUS17651

0.962

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS10316	NBR_LOCUS14259	A0A0N4Y3E2	A0A0N4YCJ0	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.996
NBR_LOCUS10316	NBR_LOCUS15077	A0A0N4Y3E2	A0A158R252	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.996
NBR_LOCUS10316	NBR_LOCUS17651	A0A0N4Y3E2	A0A0N4YKR3	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	Nuclear transcription factor Y subunit gamma (inferred by orthology to a human protein).	0.764
NBR_LOCUS10316	NBR_LOCUS1914	A0A0N4Y3E2	A0A3P7AHV8	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.996
NBR_LOCUS10316	NBR_LOCUS20993	A0A0N4Y3E2	A0A0N4YUS0	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	CBFD_NFYB_HMF domain-containing protein.	0.994
NBR_LOCUS10316	NBR_LOCUS21126	A0A0N4Y3E2	A0A0N4YV53	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	Chromatin-remodeling complex ATPase chain isw-1 (inferred by orthology to a C. elegans protein).	0.474
NBR_LOCUS10316	NBR_LOCUS299	A0A0N4Y3E2	A0A0N4XCU6	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	DNA polymerase epsilon subunit 4 (inferred by orthology to a human protein).	0.998
NBR_LOCUS10316	NBR_LOCUS7826	A0A0N4Y3E2	A0A0N4XXT0	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	Nuclear transcription factor Y subunit gamma (inferred by orthology to a human protein).	0.764
NBR_LOCUS10316	NBR_LOCUS8697	A0A0N4Y3E2	A0A0N4XZR6	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	Chromatin-remodeling complex ATPase chain isw-1 (inferred by orthology to a C. elegans protein).	0.474
NBR_LOCUS14259	NBR_LOCUS10316	A0A0N4YCJ0	A0A0N4Y3E2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	0.996
NBR_LOCUS14259	NBR_LOCUS17651	A0A0N4YCJ0	A0A0N4YKR3	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Nuclear transcription factor Y subunit gamma (inferred by orthology to a human protein).	0.667
NBR_LOCUS14259	NBR_LOCUS20993	A0A0N4YCJ0	A0A0N4YUS0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	CBFD_NFYB_HMF domain-containing protein.	0.985
NBR_LOCUS14259	NBR_LOCUS21126	A0A0N4YCJ0	A0A0N4YV53	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Chromatin-remodeling complex ATPase chain isw-1 (inferred by orthology to a C. elegans protein).	0.493
NBR_LOCUS14259	NBR_LOCUS299	A0A0N4YCJ0	A0A0N4XCU6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase epsilon subunit 4 (inferred by orthology to a human protein).	0.991
NBR_LOCUS14259	NBR_LOCUS7826	A0A0N4YCJ0	A0A0N4XXT0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Nuclear transcription factor Y subunit gamma (inferred by orthology to a human protein).	0.667
NBR_LOCUS14259	NBR_LOCUS8697	A0A0N4YCJ0	A0A0N4XZR6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Chromatin-remodeling complex ATPase chain isw-1 (inferred by orthology to a C. elegans protein).	0.493
NBR_LOCUS15077	NBR_LOCUS10316	A0A158R252	A0A0N4Y3E2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Probable DNA polymerase epsilon subunit 2 (inferred by orthology to a C. elegans protein).	0.996
NBR_LOCUS15077	NBR_LOCUS17651	A0A158R252	A0A0N4YKR3	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Nuclear transcription factor Y subunit gamma (inferred by orthology to a human protein).	0.667
NBR_LOCUS15077	NBR_LOCUS1914	A0A158R252	A0A3P7AHV8	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.967
NBR_LOCUS15077	NBR_LOCUS20993	A0A158R252	A0A0N4YUS0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	CBFD_NFYB_HMF domain-containing protein.	0.985