STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS21238Uncharacterized protein. (139 aa)    
Predicted Functional Partners:
NBR_LOCUS16953
Probable ubiquitin carboxyl-terminal hydrolase 46 (inferred by orthology to a C. elegans protein); Belongs to the peptidase C19 family.
    
 0.984
NBR_LOCUS17443
Uncharacterized protein.
    
 0.981
NBR_LOCUS12750
Uncharacterized protein; Belongs to the peptidase C19 family.
   
 0.951
NBR_LOCUS17444
Uncharacterized protein.
    
 0.885
NBR_LOCUS22490
Uncharacterized protein.
    
 0.885
NBR_LOCUS10250
HORMA domain-containing protein.
   
 0.830
NBR_LOCUS933
Uncharacterized protein.
    
 0.826
NBR_LOCUS9479
Transcription initiation factor TFIID subunit 12 (inferred by orthology to a human protein).
   
 0.826
NBR_LOCUS6456
Uncharacterized protein.
    
 0.825
NBR_LOCUS5903
BTP domain-containing protein.
   
 0.816
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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