STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS21650Histone-lysine N-methyltransferase setd3 (inferred by orthology to a human protein). (331 aa)    
Predicted Functional Partners:
NBR_LOCUS2904
Histone-lysine N-methyltransferase setd3 (inferred by orthology to a human protein).
 
      0.790
NBR_LOCUS6870
Succinate-CoA ligase subunit beta.
   
 0.780
NBR_LOCUS14344
Histone-lysine N-methyltransferase.
     
 0.762
NBR_LOCUS9730
Protein BCCIP homolog (inferred by orthology to a C. elegans protein).
   
 
 0.732
NBR_LOCUS1424
MINDY_DUB domain-containing protein.
    
 0.691
NBR_LOCUS9742
MINDY_DUB domain-containing protein.
    
 0.691
NBR_LOCUS16121
Uncharacterized protein.
    
 0.691
NBR_LOCUS11475
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
 0.690
NBR_LOCUS12139
Exonuclease mut-7 (inferred by orthology to a C. elegans protein).
   
    0.679
NBR_LOCUS7886
MYND-type domain-containing protein.
   
 
 0.650
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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