NBR_LOCUS22287 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS22287

Translation factor GUF1, mitochondrial (inferred by orthology to a human protein). (546 aa)

Predicted Functional Partners:

NBR_LOCUS16864

0.979

NBR_LOCUS8546

0.978

NBR_LOCUS10873

0.977

NBR_LOCUS9782

0.974

NBR_LOCUS9480

0.973

NBR_LOCUS10635

0.973

NBR_LOCUS14253

0.973

NBR_LOCUS20467

0.973

NBR_LOCUS960

0.972

NBR_LOCUS15493

0.972

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS10635	NBR_LOCUS10873	A0A0N4Y442	A0A0N4Y4N3	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	0.999
NBR_LOCUS10635	NBR_LOCUS14253	A0A0N4Y442	A0A0N4YCI4	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	40S ribosomal protein S15a (inferred by orthology to a human protein); Belongs to the universal ribosomal protein uS8 family.	0.999
NBR_LOCUS10635	NBR_LOCUS15493	A0A0N4Y442	A0A0N4YFG1	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	60S ribosomal protein L10 (inferred by orthology to a C. elegans protein).	0.999
NBR_LOCUS10635	NBR_LOCUS16864	A0A0N4Y442	A0A0N4YIV7	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.999
NBR_LOCUS10635	NBR_LOCUS20467	A0A0N4Y442	A0A0N4YT94	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	60S ribosomal protein L9 (inferred by orthology to a C. elegans protein).	0.999
NBR_LOCUS10635	NBR_LOCUS22287	A0A0N4Y442	A0A0N4YYG4	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	Translation factor GUF1, mitochondrial (inferred by orthology to a human protein).	0.973
NBR_LOCUS10635	NBR_LOCUS8546	A0A0N4Y442	A0A0N4XZE7	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	Uncharacterized protein.	0.999
NBR_LOCUS10635	NBR_LOCUS9480	A0A0N4Y442	A0A0N4Y1I0	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	40S ribosomal protein S3 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uS3 family.	0.999
NBR_LOCUS10635	NBR_LOCUS960	A0A0N4Y442	A0A0N4XEK7	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	40S ribosomal protein S18 (inferred by orthology to a human protein).	0.999
NBR_LOCUS10635	NBR_LOCUS9782	A0A0N4Y442	A0A0N4Y270	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	Probable 40S ribosomal protein S9, mitochondrial (inferred by orthology to a C. elegans protein).	0.999
NBR_LOCUS10873	NBR_LOCUS10635	A0A0N4Y4N3	A0A0N4Y442	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	60S ribosomal protein L23 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uL14 family.	0.999
NBR_LOCUS10873	NBR_LOCUS14253	A0A0N4Y4N3	A0A0N4YCI4	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	40S ribosomal protein S15a (inferred by orthology to a human protein); Belongs to the universal ribosomal protein uS8 family.	0.999
NBR_LOCUS10873	NBR_LOCUS15493	A0A0N4Y4N3	A0A0N4YFG1	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	60S ribosomal protein L10 (inferred by orthology to a C. elegans protein).	0.999
NBR_LOCUS10873	NBR_LOCUS16864	A0A0N4Y4N3	A0A0N4YIV7	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.999
NBR_LOCUS10873	NBR_LOCUS20467	A0A0N4Y4N3	A0A0N4YT94	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	60S ribosomal protein L9 (inferred by orthology to a C. elegans protein).	0.999
NBR_LOCUS10873	NBR_LOCUS22287	A0A0N4Y4N3	A0A0N4YYG4	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	Translation factor GUF1, mitochondrial (inferred by orthology to a human protein).	0.977
NBR_LOCUS10873	NBR_LOCUS8546	A0A0N4Y4N3	A0A0N4XZE7	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.999
NBR_LOCUS10873	NBR_LOCUS9480	A0A0N4Y4N3	A0A0N4Y1I0	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	40S ribosomal protein S3 (inferred by orthology to a C. elegans protein); Belongs to the universal ribosomal protein uS3 family.	0.999
NBR_LOCUS10873	NBR_LOCUS960	A0A0N4Y4N3	A0A0N4XEK7	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	40S ribosomal protein S18 (inferred by orthology to a human protein).	0.999
NBR_LOCUS10873	NBR_LOCUS9782	A0A0N4Y4N3	A0A0N4Y270	Probable 39S ribosomal protein L32, mitochondrial (inferred by orthology to a C. elegans protein).	Probable 40S ribosomal protein S9, mitochondrial (inferred by orthology to a C. elegans protein).	0.999