STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS22791Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (127 aa)    
Predicted Functional Partners:
NBR_LOCUS19357
DH domain-containing protein.
   
 
 0.858
NBR_LOCUS4953
Uncharacterized protein.
   
 0.806
NBR_LOCUS17623
Uncharacterized protein.
   
 0.806
NBR_LOCUS12375
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.673
NBR_LOCUS21362
Cyclin-dependent kinase 5 activator 1 (inferred by orthology to a C. elegans protein).
   
 
 0.619
NBR_LOCUS9207
FERM domain-containing protein.
    
 0.595
NBR_LOCUS1108
I/LWEQ domain-containing protein.
    
 0.595
NBR_LOCUS5014
Uncharacterized protein.
    
 0.595
NBR_LOCUS10239
GH13992p (inferred by orthology to a D. melanogaster protein).
    
 
 0.504
NBR_LOCUS15460
GH13992p (inferred by orthology to a D. melanogaster protein).
    
 
 0.504
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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