NBR_LOCUS356 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS356

Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein). (331 aa)

Predicted Functional Partners:

NBR_LOCUS10739

0.495

NBR_LOCUS95

0.491

NBR_LOCUS11437

0.489

NBR_LOCUS7988

0.487

NBR_LOCUS11773

0.485

NBR_LOCUS19090

0.482

NBR_LOCUS6322

0.480

NBR_LOCUS7481

0.478

NBR_LOCUS10169

0.477

NBR_LOCUS6218

0.441

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS10169	NBR_LOCUS356	A0A0N4Y325	A0A158QWJ6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	0.477
NBR_LOCUS10739	NBR_LOCUS19090	A0A0N4Y4C4	A0A0N4YPB8	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	Uncharacterized protein.	0.478
NBR_LOCUS10739	NBR_LOCUS356	A0A0N4Y4C4	A0A158QWJ6	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	0.495
NBR_LOCUS10739	NBR_LOCUS7481	A0A0N4Y4C4	A0A0N4XX12	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	IPPc domain-containing protein.	0.477
NBR_LOCUS11437	NBR_LOCUS356	A0A0N4Y5X2	A0A158QWJ6	Transmembrane protein 201 (inferred by orthology to a human protein).	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	0.489
NBR_LOCUS11773	NBR_LOCUS356	A0A0N4Y6P7	A0A158QWJ6	Succinyl-CoA:3-ketoacid-coenzyme A transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	0.485
NBR_LOCUS11773	NBR_LOCUS7988	A0A0N4Y6P7	A0A0N4XY54	Succinyl-CoA:3-ketoacid-coenzyme A transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.	Uncharacterized protein.	0.403
NBR_LOCUS19090	NBR_LOCUS10739	A0A0N4YPB8	A0A0N4Y4C4	Uncharacterized protein.	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.478
NBR_LOCUS19090	NBR_LOCUS356	A0A0N4YPB8	A0A158QWJ6	Uncharacterized protein.	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	0.482
NBR_LOCUS19090	NBR_LOCUS7481	A0A0N4YPB8	A0A0N4XX12	Uncharacterized protein.	IPPc domain-containing protein.	0.438
NBR_LOCUS356	NBR_LOCUS10169	A0A158QWJ6	A0A0N4Y325	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.477
NBR_LOCUS356	NBR_LOCUS10739	A0A158QWJ6	A0A0N4Y4C4	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.495
NBR_LOCUS356	NBR_LOCUS11437	A0A158QWJ6	A0A0N4Y5X2	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	Transmembrane protein 201 (inferred by orthology to a human protein).	0.489
NBR_LOCUS356	NBR_LOCUS11773	A0A158QWJ6	A0A0N4Y6P7	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	Succinyl-CoA:3-ketoacid-coenzyme A transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.	0.485
NBR_LOCUS356	NBR_LOCUS19090	A0A158QWJ6	A0A0N4YPB8	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.482
NBR_LOCUS356	NBR_LOCUS6218	A0A158QWJ6	A0A0N4XU56	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	MIF4G domain-containing protein.	0.441
NBR_LOCUS356	NBR_LOCUS6322	A0A158QWJ6	A0A0N4XUE2	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	Glucosidase 2 subunit beta (inferred by orthology to a human protein).	0.480
NBR_LOCUS356	NBR_LOCUS7481	A0A158QWJ6	A0A0N4XX12	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	IPPc domain-containing protein.	0.478
NBR_LOCUS356	NBR_LOCUS7988	A0A158QWJ6	A0A0N4XY54	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.487
NBR_LOCUS356	NBR_LOCUS95	A0A158QWJ6	A0A0N4XCC7	Putative serine/threonine-protein kinase (inferred by orthology to a C. elegans protein).	Probable glycerol kinase (inferred by orthology to a C. elegans protein).	0.491