STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS5737Uncharacterized protein. (349 aa)    
Predicted Functional Partners:
NBR_LOCUS8249
ER membrane protein complex subunit 7 homolog (inferred by orthology to a C. elegans protein).
      
 0.544
NBR_LOCUS12704
TPR_REGION domain-containing protein.
      
 0.489
NBR_LOCUS14716
Charged multivesicular body protein 2a (inferred by orthology to a human protein).
      
 0.481
NBR_LOCUS20581
Uncharacterized protein.
      
 0.450
NBR_LOCUS9971
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
  
 0.434
NBR_LOCUS16902
Proteasome subunit beta.
   
  
 0.410
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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