NBR_LOCUS5829 protein (Nippostrongylus brasiliensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NBR_LOCUS5829

Multidrug resistance-associated protein 4 (inferred by orthology to a human protein). (1546 aa)

Predicted Functional Partners:

NBR_LOCUS6635

0.853

NBR_LOCUS6636

0.853

NBR_LOCUS7785

0.728

NBR_LOCUS8602

0.728

NBR_LOCUS9632

0.687

NBR_LOCUS18531

0.687

NBR_LOCUS3635

0.685

NBR_LOCUS3779

0.685

NBR_LOCUS5924

0.674

NBR_LOCUS8109

0.670

Your Current Organism:

Nippostrongylus brasiliensis

NCBI taxonomy Id: 27835
Other names: N. brasiliensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NBR_LOCUS18531	NBR_LOCUS5829	A0A158R3L5	A0A158QWV0	Uncharacterized protein.	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	0.687
NBR_LOCUS18531	NBR_LOCUS9632	A0A158R3L5	A0A0N4Y1V6	Uncharacterized protein.	PDZ domain-containing protein.	0.891
NBR_LOCUS3635	NBR_LOCUS5829	A0A0N4XM82	A0A158QWV0	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	0.685
NBR_LOCUS3635	NBR_LOCUS7785	A0A0N4XM82	A0A158QY25	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Transitional endoplasmic reticulum ATPase (inferred by orthology to a human protein); Belongs to the AAA ATPase family.	0.986
NBR_LOCUS3635	NBR_LOCUS8109	A0A0N4XM82	A0A0N4XYF3	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	RING-type domain-containing protein.	0.833
NBR_LOCUS3635	NBR_LOCUS8602	A0A0N4XM82	A0A158QYK0	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.986
NBR_LOCUS3779	NBR_LOCUS5829	A0A0N4XMM3	A0A158QWV0	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	0.685
NBR_LOCUS3779	NBR_LOCUS7785	A0A0N4XMM3	A0A158QY25	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Transitional endoplasmic reticulum ATPase (inferred by orthology to a human protein); Belongs to the AAA ATPase family.	0.986
NBR_LOCUS3779	NBR_LOCUS8109	A0A0N4XMM3	A0A0N4XYF3	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	RING-type domain-containing protein.	0.833
NBR_LOCUS3779	NBR_LOCUS8602	A0A0N4XMM3	A0A158QYK0	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.986
NBR_LOCUS5829	NBR_LOCUS18531	A0A158QWV0	A0A158R3L5	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	Uncharacterized protein.	0.687
NBR_LOCUS5829	NBR_LOCUS3635	A0A158QWV0	A0A0N4XM82	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.685
NBR_LOCUS5829	NBR_LOCUS3779	A0A158QWV0	A0A0N4XMM3	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.685
NBR_LOCUS5829	NBR_LOCUS5924	A0A158QWV0	A0A158QWX2	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	Uncharacterized protein.	0.674
NBR_LOCUS5829	NBR_LOCUS6635	A0A158QWV0	A0A0N4XV42	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	Inward rectifier potassium channel irk-1 (inferred by orthology to a C. elegans protein).	0.853
NBR_LOCUS5829	NBR_LOCUS6636	A0A158QWV0	A0A0N4XV43	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	Uncharacterized protein.	0.853
NBR_LOCUS5829	NBR_LOCUS7785	A0A158QWV0	A0A158QY25	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	Transitional endoplasmic reticulum ATPase (inferred by orthology to a human protein); Belongs to the AAA ATPase family.	0.728
NBR_LOCUS5829	NBR_LOCUS8109	A0A158QWV0	A0A0N4XYF3	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	RING-type domain-containing protein.	0.670
NBR_LOCUS5829	NBR_LOCUS8602	A0A158QWV0	A0A158QYK0	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	Uncharacterized protein.	0.728
NBR_LOCUS5829	NBR_LOCUS9632	A0A158QWV0	A0A0N4Y1V6	Multidrug resistance-associated protein 4 (inferred by orthology to a human protein).	PDZ domain-containing protein.	0.687