STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS5852Uncharacterized protein. (914 aa)    
Predicted Functional Partners:
NBR_LOCUS4702
Heterogeneous nuclear ribonucleoprotein A1 (inferred by orthology to a C. elegans protein).
    
 
 0.836
NBR_LOCUS16830
Elongation factor G, mitochondrial (inferred by orthology to a C. elegans protein).
   
  
 0.666
NBR_LOCUS19217
EFG_C domain-containing protein.
   
  
 0.666
NBR_LOCUS2733
Cytochrome c 2.1 (inferred by orthology to a C. elegans protein); Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 
 0.657
NBR_LOCUS14127
Probable cytochrome c 2.2 (inferred by orthology to a C. elegans protein); Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 
 0.657
NBR_LOCUS6279
Peptidyl-tRNA hydrolase ICT1, mitochondrial (inferred by orthology to a human protein).
    
 
 0.627
NBR_LOCUS6158
RNA-binding protein 4F (inferred by orthology to a D. melanogaster protein).
    
 
 0.588
NBR_LOCUS6223
Exportin-1 (inferred by orthology to a human protein).
   
  
 0.583
NBR_LOCUS14240
Probable proline--tRNA ligase, mitochondrial (inferred by orthology to a human protein).
   
 
 0.579
NBR_LOCUS18752
28S ribosomal protein S22, mitochondrial (inferred by orthology to a human protein).
   
  
 0.566
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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