STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS17275Probable RNA methyltransferase (inferred by orthology to a C. elegans protein). (423 aa)    
Predicted Functional Partners:
NBR_LOCUS22255
Uncharacterized protein.
   
   0.932
NBR_LOCUS19949
Probable cyclin-dependent kinase 9 (inferred by orthology to a C. elegans protein); Belongs to the protein kinase superfamily.
    
 
 0.877
NBR_LOCUS22495
Probable cyclin-dependent kinase 9 (inferred by orthology to a C. elegans protein); Belongs to the protein kinase superfamily.
    
 
 0.877
NBR_LOCUS862
Uncharacterized protein.
    
 
 0.822
NBR_LOCUS6158
RNA-binding protein 4F (inferred by orthology to a D. melanogaster protein).
    
 
 0.818
NBR_LOCUS18332
Uncharacterized protein.
    
 
 0.714
NBR_LOCUS17808
Cyclin-T (inferred by orthology to a D. melanogaster protein); Belongs to the cyclin family.
    
 
 0.658
NBR_LOCUS6608
WD_REPEATS_REGION domain-containing protein.
    
   0.653
NBR_LOCUS11889
Probable small nuclear ribonucleoprotein F (inferred by orthology to a C. elegans protein); Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
   0.609
NBR_LOCUS16725
Ribonucleases P/MRP protein subunit POP1 (inferred by orthology to a human protein).
    
 
 0.538
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.