STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NBR_LOCUS5014Uncharacterized protein. (195 aa)    
Predicted Functional Partners:
NBR_LOCUS21636
Vinculin (inferred by orthology to a human protein).
   
 0.986
NBR_LOCUS8325
Vinculin (inferred by orthology to a C. elegans protein).
   
 0.986
NBR_LOCUS8495
Abnormal cell migration protein 10 (inferred by orthology to a C. elegans protein).
    
 0.937
NBR_LOCUS9207
FERM domain-containing protein.
 
     0.937
NBR_LOCUS1108
I/LWEQ domain-containing protein.
 
     0.933
NBR_LOCUS140
Integrin beta; Belongs to the integrin beta chain family.
   
 0.886
NBR_LOCUS6645
Uncharacterized integrin beta-like protein (inferred by orthology to a C. elegans protein).
   
 0.886
NBR_LOCUS1348
Alpha-catulin (inferred by orthology to a human protein).
   
 0.869
NBR_LOCUS1349
Alpha-catulin (inferred by orthology to a human protein).
   
 0.869
NBR_LOCUS2271
Alpha-catulin (inferred by orthology to a human protein).
   
 0.869
Your Current Organism:
Nippostrongylus brasiliensis
NCBI taxonomy Id: 27835
Other names: N. brasiliensis
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