STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4Z1JC81Uncharacterized protein. (684 aa)    
Predicted Functional Partners:
A0A4Z1JRM0
Uncharacterized protein.
    
 0.656
A0A4Z1JRJ2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.600
A0A4Z1JU95
Hist_deacetyl domain-containing protein.
    
 0.600
A0A4Z1JYS7
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.503
A0A4Z1JV84
MADS-box domain-containing protein.
    
 
 0.500
A0A4Z1JC84
Hist_deacetyl domain-containing protein.
    
  0.486
A0A4Z1K8L5
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
    
  0.486
A0A4Z1JHU3
Uncharacterized protein.
    
 0.417
A0A4Z1JLC0
Uncharacterized protein.
    
 0.417
A0A4Z1JRW5
E3 ubiquitin-protein ligase.
    
 0.417
Your Current Organism:
Botrytis elliptica
NCBI taxonomy Id: 278938
Other names: B. elliptica
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