A0A4Z1JDS1 protein (Botrytis elliptica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Z1JDS1

Uncharacterized protein. (490 aa)

Predicted Functional Partners:

A0A4Z1JLI3

0.784

A0A4Z1I526

0.754

A0A4Z1JP86

0.754

A0A4Z1JBQ1

0.714

A0A4Z1IN71

0.688

A0A4Z1J091

0.688

A0A4Z1JJ56

0.688

A0A4Z1JL16

0.688

A0A4Z1JJ29

0.681

A0A4Z1JJX8

0.681

Your Current Organism:

Botrytis elliptica

NCBI taxonomy Id: 278938
Other names: B. elliptica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Z1I526	A0A4Z1JDS1	PH domain-containing protein.	Uncharacterized protein.	0.754
A0A4Z1I526	A0A4Z1JJ29	PH domain-containing protein.	Uncharacterized protein.	0.729
A0A4Z1I526	A0A4Z1JJX8	PH domain-containing protein.	SH3 domain-containing protein.	0.729
A0A4Z1IN71	A0A4Z1J091	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.568
A0A4Z1IN71	A0A4Z1JDS1	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.688
A0A4Z1IN71	A0A4Z1JJ29	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Uncharacterized protein.	0.403
A0A4Z1IN71	A0A4Z1JJ56	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.654
A0A4Z1IN71	A0A4Z1JJX8	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	SH3 domain-containing protein.	0.414
A0A4Z1IN71	A0A4Z1JL16	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.660
A0A4Z1IN71	A0A4Z1JLI3	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.411
A0A4Z1J091	A0A4Z1IN71	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.568
A0A4Z1J091	A0A4Z1JDS1	Uncharacterized protein.	Uncharacterized protein.	0.688
A0A4Z1J091	A0A4Z1JJ29	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A4Z1J091	A0A4Z1JJX8	Uncharacterized protein.	SH3 domain-containing protein.	0.403
A0A4Z1J091	A0A4Z1JL16	Uncharacterized protein.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.712
A0A4Z1JBQ1	A0A4Z1JDS1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.714
A0A4Z1JBQ1	A0A4Z1JJ29	Protein kinase domain-containing protein.	Uncharacterized protein.	0.498
A0A4Z1JBQ1	A0A4Z1JJX8	Protein kinase domain-containing protein.	SH3 domain-containing protein.	0.498
A0A4Z1JBQ1	A0A4Z1JLI3	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.950
A0A4Z1JDS1	A0A4Z1I526	Uncharacterized protein.	PH domain-containing protein.	0.754

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

30

average node degree:

5.45

avg. local clustering coefficient:

0.719

expected number of edges:

16

PPI enrichment p-value:

0.00125

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006310

DNA recombination

5 of 80

1.51

1.58

0.00021

GO:0015074

DNA integration

3 of 23

1.83

1.18

0.0074

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000150

DNA strand exchange activity

4 of 13

2.2

2.78

9.14e-06

GO:0140097

Catalytic activity, acting on DNA

5 of 129

1.3

1.23

0.00058

GO:0003677

DNA binding

5 of 353

0.87

0.51

0.0357

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7142

DNA strand exchange activity

4 of 11

2.28

3.04

3.50e-06

CL:7422

Mixed, incl. NUDIX hydrolase, and Transposase activity

3 of 7

2.35

2.27

0.00012

CL:7083

Mixed, incl. DNA metabolic process, and Transmembrane

7 of 193

1.27

1.59

3.50e-06

CL:7144

Recombinase zinc beta ribbon domain

2 of 5

2.32

1.38

0.0048

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0018995

Host cellular component

4 of 18

2.06

2.62

1.16e-05

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036162

Resolvase-like, N-terminal catalytic domain superfamily

4 of 13

2.2

2.61

2.02e-05

IPR006119

Resolvase, N-terminal catalytic domain

4 of 13

2.2

2.61

2.02e-05

IPR025827

Recombinase zinc beta ribbon domain

3 of 6

2.41

2.17

0.00020

IPR038109

DNA-binding recombinase domain superfamily

3 of 9

2.24

1.96

0.00039

IPR011109

DNA-binding recombinase domain

3 of 9

2.24

1.96

0.00039

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00857

Resolvase, N terminal domain

3 of 11

2.15

2.07

0.00021

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (22%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About