A0A4Z1JER7 protein (Botrytis elliptica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Z1JER7

Uncharacterized protein. (1076 aa)

Predicted Functional Partners:

A0A4Z1JF38

0.939

A0A4Z1JRJ2

0.931

A0A4Z1JU95

0.931

A0A4Z1JEQ4

0.875

A0A4Z1JPD0

0.870

A0A4Z1JX09

0.843

A0A4Z1J0V4

0.824

A0A4Z1J2U7

0.824

A0A4Z1JY28

0.824

A0A4Z1K3I1

0.824

Your Current Organism:

Botrytis elliptica

NCBI taxonomy Id: 278938
Other names: B. elliptica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Z1J0V4	A0A4Z1JER7	Histone domain-containing protein.	Uncharacterized protein.	0.824
A0A4Z1J0V4	A0A4Z1JPD0	Histone domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.913
A0A4Z1J0V4	A0A4Z1JRJ2	Histone domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.738
A0A4Z1J0V4	A0A4Z1JU95	Histone domain-containing protein.	Hist_deacetyl domain-containing protein.	0.750
A0A4Z1J0V4	A0A4Z1JX09	Histone domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.948
A0A4Z1J2U7	A0A4Z1JER7	Histone domain-containing protein.	Uncharacterized protein.	0.824
A0A4Z1J2U7	A0A4Z1JPD0	Histone domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.913
A0A4Z1J2U7	A0A4Z1JRJ2	Histone domain-containing protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.738
A0A4Z1J2U7	A0A4Z1JU95	Histone domain-containing protein.	Hist_deacetyl domain-containing protein.	0.750
A0A4Z1J2U7	A0A4Z1JX09	Histone domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.948
A0A4Z1JEQ4	A0A4Z1JER7	Tryptophan synthase.	Uncharacterized protein.	0.875
A0A4Z1JER7	A0A4Z1J0V4	Uncharacterized protein.	Histone domain-containing protein.	0.824
A0A4Z1JER7	A0A4Z1J2U7	Uncharacterized protein.	Histone domain-containing protein.	0.824
A0A4Z1JER7	A0A4Z1JEQ4	Uncharacterized protein.	Tryptophan synthase.	0.875
A0A4Z1JER7	A0A4Z1JF38	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.939
A0A4Z1JER7	A0A4Z1JPD0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.870
A0A4Z1JER7	A0A4Z1JRJ2	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.931
A0A4Z1JER7	A0A4Z1JU95	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.931
A0A4Z1JER7	A0A4Z1JX09	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.843
A0A4Z1JER7	A0A4Z1JY28	Uncharacterized protein.	Histone domain-containing protein.	0.824