A0A4Z1JKW8 protein (Botrytis elliptica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Z1JKW8

Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (300 aa)

Predicted Functional Partners:

A0A4Z1K3T6

0.620

A0A4Z1IXP7

0.605

A0A4Z1JWA1

0.605

A0A4Z1JRT4

0.571

A0A4Z1JYQ9

0.553

A0A4Z1K6W5

0.553

A0A4Z1JCP9

0.509

A0A4Z1K8L7

0.466

A0A4Z1JHH7

0.442

A0A4Z1JMX8

0.442

Your Current Organism:

Botrytis elliptica

NCBI taxonomy Id: 278938
Other names: B. elliptica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Z1IXP7	A0A4Z1JHH7	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein.	0.683
A0A4Z1IXP7	A0A4Z1JKW8	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.605
A0A4Z1IXP7	A0A4Z1JMX8	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.698
A0A4Z1IXP7	A0A4Z1JRT4	Citrate synthase; Belongs to the citrate synthase family.	DNA_pol_E_B domain-containing protein.	0.703
A0A4Z1IXP7	A0A4Z1JWA1	Citrate synthase; Belongs to the citrate synthase family.	Citrate synthase; Belongs to the citrate synthase family.	0.896
A0A4Z1IXP7	A0A4Z1JYQ9	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein.	0.703
A0A4Z1IXP7	A0A4Z1K3T6	Citrate synthase; Belongs to the citrate synthase family.	Isocitrate lyase.	0.847
A0A4Z1IXP7	A0A4Z1K6W5	Citrate synthase; Belongs to the citrate synthase family.	OBG-type G domain-containing protein.	0.703
A0A4Z1JCP9	A0A4Z1JKW8	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.509
A0A4Z1JHH7	A0A4Z1IXP7	Uncharacterized protein.	Citrate synthase; Belongs to the citrate synthase family.	0.683
A0A4Z1JHH7	A0A4Z1JKW8	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.442
A0A4Z1JHH7	A0A4Z1JMX8	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.655
A0A4Z1JHH7	A0A4Z1JRT4	Uncharacterized protein.	DNA_pol_E_B domain-containing protein.	0.703
A0A4Z1JHH7	A0A4Z1JWA1	Uncharacterized protein.	Citrate synthase; Belongs to the citrate synthase family.	0.683
A0A4Z1JHH7	A0A4Z1JYQ9	Uncharacterized protein.	Uncharacterized protein.	0.703
A0A4Z1JHH7	A0A4Z1K6W5	Uncharacterized protein.	OBG-type G domain-containing protein.	0.735
A0A4Z1JKW8	A0A4Z1IXP7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Citrate synthase; Belongs to the citrate synthase family.	0.605
A0A4Z1JKW8	A0A4Z1JCP9	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.509
A0A4Z1JKW8	A0A4Z1JHH7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.442
A0A4Z1JKW8	A0A4Z1JMX8	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.442