A0A4Z1JLN2 protein (Botrytis elliptica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Z1JLN2

RBR-type E3 ubiquitin transferase. (518 aa)

Predicted Functional Partners:

A0A4Z1JNN1

0.918

A0A4Z1K964

0.917

A0A4Z1JH43

0.897

A0A4Z1JM63

0.894

A0A4Z1JYI8

0.894

A0A4Z1JIZ0

0.890

A0A4Z1IGZ1

0.884

A0A4Z1K2I3

0.843

A0A4Z1K8A0

0.843

A0A4Z1KA72

0.843

Your Current Organism:

Botrytis elliptica

NCBI taxonomy Id: 278938
Other names: B. elliptica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Z1IGZ1	A0A4Z1JLN2	PIPK domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.884
A0A4Z1IGZ1	A0A4Z1K2I3	PIPK domain-containing protein.	BZIP domain-containing protein.	0.501
A0A4Z1IGZ1	A0A4Z1K8A0	PIPK domain-containing protein.	CIA30 domain-containing protein.	0.501
A0A4Z1IGZ1	A0A4Z1K964	PIPK domain-containing protein.	Uncharacterized protein.	0.501
A0A4Z1IGZ1	A0A4Z1KA72	PIPK domain-containing protein.	Ubiquitin-like domain-containing protein.	0.501
A0A4Z1JH43	A0A4Z1JIZ0	RRN7-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.864
A0A4Z1JH43	A0A4Z1JLN2	RRN7-type domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.897
A0A4Z1JH43	A0A4Z1JNN1	RRN7-type domain-containing protein.	RING-type domain-containing protein.	0.944
A0A4Z1JH43	A0A4Z1K2I3	RRN7-type domain-containing protein.	BZIP domain-containing protein.	0.980
A0A4Z1JH43	A0A4Z1K8A0	RRN7-type domain-containing protein.	CIA30 domain-containing protein.	0.980
A0A4Z1JH43	A0A4Z1K964	RRN7-type domain-containing protein.	Uncharacterized protein.	0.954
A0A4Z1JH43	A0A4Z1KA72	RRN7-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
A0A4Z1JIZ0	A0A4Z1JH43	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RRN7-type domain-containing protein.	0.864
A0A4Z1JIZ0	A0A4Z1JLN2	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.890
A0A4Z1JIZ0	A0A4Z1JNN1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RING-type domain-containing protein.	0.868
A0A4Z1JIZ0	A0A4Z1K2I3	UBIQUITIN_CONJUGAT_2 domain-containing protein.	BZIP domain-containing protein.	0.704
A0A4Z1JIZ0	A0A4Z1K8A0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	CIA30 domain-containing protein.	0.704
A0A4Z1JIZ0	A0A4Z1K964	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.570
A0A4Z1JIZ0	A0A4Z1KA72	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.704
A0A4Z1JLN2	A0A4Z1IGZ1	RBR-type E3 ubiquitin transferase.	PIPK domain-containing protein.	0.884