STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAS41825.1Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)    
Predicted Functional Partners:
Ga0100231_05310
DNA topoisomerase III; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.936
OAS43538.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.923
OAS40495.1
Type II secretory pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.898
Ga0100231_09755
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.826
OAS43537.1
Secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.802
OAS41824.1
Type IV pili twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.775
gspE
Cysteine desulfurase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.736
OAS42290.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.574
OAS43463.1
Protein transporter HofB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.559
Ga0100231_21435
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.552
Your Current Organism:
Opitutaceae bacterium TAV4
NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.