OAS41862.1 protein (Opitutaceae bacterium TAV4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OAS41862.1

Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1333 aa)

Predicted Functional Partners:

OAS43580.1

0.765

OAS41236.1

0.759

OAS38752.1

0.757

OAS40590.1

0.750

OAS41508.1

0.746

OAS41770.1

0.736

OAS41295.1

0.713

OAS41485.1

0.702

OAS39050.1

0.656

Ga0100231_22005

0.627

Your Current Organism:

Opitutaceae bacterium TAV4

NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ga0100231_22005	OAS38752.1	Ga0100231_22005	Ga0100231_01350	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.607
Ga0100231_22005	OAS39050.1	Ga0100231_22005	Ga0100231_06060	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.544
Ga0100231_22005	OAS40590.1	Ga0100231_22005	Ga0100231_14120	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.615
Ga0100231_22005	OAS41236.1	Ga0100231_22005	Ga0100231_03445	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.607
Ga0100231_22005	OAS41508.1	Ga0100231_22005	Ga0100231_06750	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
Ga0100231_22005	OAS41770.1	Ga0100231_22005	Ga0100231_18220	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.688
Ga0100231_22005	OAS41862.1	Ga0100231_22005	Ga0100231_02015	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
Ga0100231_22005	OAS43580.1	Ga0100231_22005	Ga0100231_20970	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.731
OAS38752.1	Ga0100231_22005	Ga0100231_01350	Ga0100231_22005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.607
OAS38752.1	OAS39050.1	Ga0100231_01350	Ga0100231_06060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.629
OAS38752.1	OAS41236.1	Ga0100231_01350	Ga0100231_03445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.767
OAS38752.1	OAS41295.1	Ga0100231_01350	Ga0100231_03850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.649
OAS38752.1	OAS41770.1	Ga0100231_01350	Ga0100231_18220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.738
OAS38752.1	OAS41862.1	Ga0100231_01350	Ga0100231_02015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
OAS39050.1	Ga0100231_22005	Ga0100231_06060	Ga0100231_22005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
OAS39050.1	OAS38752.1	Ga0100231_06060	Ga0100231_01350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.629
OAS39050.1	OAS40590.1	Ga0100231_06060	Ga0100231_14120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.607
OAS39050.1	OAS41236.1	Ga0100231_06060	Ga0100231_03445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.740
OAS39050.1	OAS41508.1	Ga0100231_06060	Ga0100231_06750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
OAS39050.1	OAS41770.1	Ga0100231_06060	Ga0100231_18220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.504