STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAS41866.1Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (717 aa)    
Predicted Functional Partners:
OAS43460.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.759
OAS38622.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.750
OAS40346.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.750
OAS42547.1
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
OAS41867.1
Hypothetical protein; Catalyzes the conversion of L-arabinose to L-ribulose.
       0.639
Ga0100231_18910
Glycoside hydrolase family 20; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
OAS41137.1
Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.585
OAS38750.1
Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.570
OAS41504.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
OAS41374.1
Heparinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.541
Your Current Organism:
Opitutaceae bacterium TAV4
NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4
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