STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAS41177.1Biopolymer transporter Tol; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (410 aa)    
Predicted Functional Partners:
OAS42345.1
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.928
OAS39716.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
Ga0100231_05360
Biopolymer transporter ExbD; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.675
OAS40740.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.571
bamA
Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.553
OAS42276.1
Apolipoprotein N-acyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.481
OAS41860.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.463
OAS43129.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.453
Ga0100231_03120
DEAD/DEAH box helicase; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.442
Your Current Organism:
Opitutaceae bacterium TAV4
NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.