OAS41527.1 protein (Opitutaceae bacterium TAV4)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Cooccurrence

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Experiments

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[Homology]

Score

OAS41527.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (318 aa)

Predicted Functional Partners:

OAS39041.1

0.786

OAS43124.1

0.784

OAS38772.1

0.778

Ga0100231_15600

0.778

Ga0100231_05190

0.775

OAS39688.1

0.775

OAS38921.1

0.772

OAS42478.1

0.771

OAS43019.1

0.771

OAS43050.1

0.770

Your Current Organism:

Opitutaceae bacterium TAV4

NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ga0100231_05190	Ga0100231_15600	Ga0100231_05190	Ga0100231_15600	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
Ga0100231_05190	OAS38772.1	Ga0100231_05190	Ga0100231_01460	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
Ga0100231_05190	OAS38921.1	Ga0100231_05190	Ga0100231_05165	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.782
Ga0100231_05190	OAS39041.1	Ga0100231_05190	Ga0100231_06005	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
Ga0100231_05190	OAS41527.1	Ga0100231_05190	Ga0100231_04070	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.775
Ga0100231_05190	OAS43019.1	Ga0100231_05190	Ga0100231_16320	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
Ga0100231_05190	OAS43050.1	Ga0100231_05190	Ga0100231_16280	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
Ga0100231_15600	Ga0100231_05190	Ga0100231_15600	Ga0100231_05190	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
Ga0100231_15600	OAS38772.1	Ga0100231_15600	Ga0100231_01460	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.513
Ga0100231_15600	OAS39041.1	Ga0100231_15600	Ga0100231_06005	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
Ga0100231_15600	OAS39688.1	Ga0100231_15600	Ga0100231_07895	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.628
Ga0100231_15600	OAS41527.1	Ga0100231_15600	Ga0100231_04070	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.778
Ga0100231_15600	OAS42478.1	Ga0100231_15600	Ga0100231_15070	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.493
Ga0100231_15600	OAS43124.1	Ga0100231_15600	Ga0100231_21040	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.633
OAS38772.1	Ga0100231_05190	Ga0100231_01460	Ga0100231_05190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
OAS38772.1	Ga0100231_15600	Ga0100231_01460	Ga0100231_15600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	valine--tRNA ligase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
OAS38772.1	OAS38921.1	Ga0100231_01460	Ga0100231_05165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.784
OAS38772.1	OAS39041.1	Ga0100231_01460	Ga0100231_06005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
OAS38772.1	OAS41527.1	Ga0100231_01460	Ga0100231_04070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.778
OAS38772.1	OAS42478.1	Ga0100231_01460	Ga0100231_15070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773