node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ga0100231_05085 | OAS42568.1 | Ga0100231_05085 | Ga0100231_17470 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Histidinol-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.481 |
Ga0100231_05085 | coaD | Ga0100231_05085 | Ga0100231_11885 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.462 |
Ga0100231_05085 | coaE | Ga0100231_05085 | Ga0100231_01805 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.819 |
Ga0100231_05085 | nth | Ga0100231_05085 | Ga0100231_21980 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.727 |
Ga0100231_05085 | recA | Ga0100231_05085 | Ga0100231_14720 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.413 |
Ga0100231_05085 | recF | Ga0100231_05085 | Ga0100231_14955 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.493 |
Ga0100231_05085 | recN | Ga0100231_05085 | Ga0100231_17800 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.452 |
Ga0100231_05085 | recR | Ga0100231_05085 | Ga0100231_18600 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.421 |
Ga0100231_05085 | secD | Ga0100231_05085 | Ga0100231_08055 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.431 |
Ga0100231_05085 | tig | Ga0100231_05085 | Ga0100231_20600 | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.439 |
OAS42568.1 | Ga0100231_05085 | Ga0100231_17470 | Ga0100231_05085 | Histidinol-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.481 |
OAS42568.1 | nth | Ga0100231_17470 | Ga0100231_21980 | Histidinol-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.498 |
coaD | Ga0100231_05085 | Ga0100231_11885 | Ga0100231_05085 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.462 |
coaD | coaE | Ga0100231_11885 | Ga0100231_01805 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Hypothetical protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.921 |
coaD | recF | Ga0100231_11885 | Ga0100231_14955 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | DNA recombination protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.402 |
coaD | secD | Ga0100231_11885 | Ga0100231_08055 | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.468 |
coaE | Ga0100231_05085 | Ga0100231_01805 | Ga0100231_05085 | Hypothetical protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.819 |
coaE | coaD | Ga0100231_01805 | Ga0100231_11885 | Hypothetical protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.921 |
coaE | nth | Ga0100231_01805 | Ga0100231_21980 | Hypothetical protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.499 |
nth | Ga0100231_05085 | Ga0100231_21980 | Ga0100231_05085 | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | tRNA uridine(34) 5-carboxymethylaminomethyl synthesis enzyme MnmG; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.727 |