STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspGType II secretion system protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)    
Predicted Functional Partners:
Ga0100231_21435
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
OAS39077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.616
OAS38959.1
Type II secretory protein PulK; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.577
OAS38962.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.559
OAS38961.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.555
OAS42642.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.519
gspE
Cysteine desulfurase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.487
OAS38960.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
OAS40495.1
Type II secretory pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.481
OAS43537.1
Secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.473
Your Current Organism:
Opitutaceae bacterium TAV4
NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.