STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAS38462.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)    
Predicted Functional Partners:
Ga0100231_10100
Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.914
OAS42013.1
Nucleoside transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.737
OAS42896.1
Peptidoglycan glycosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.687
OAS40410.1
Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.668
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.625
OAS42318.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.590
OAS41483.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.574
OAS40127.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.574
OAS40017.1
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.527
Ga0100231_21755
Chromosome partitioning protein ParB; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.527
Your Current Organism:
Opitutaceae bacterium TAV4
NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.