OAS42792.1 protein (Opitutaceae bacterium TAV4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OAS42792.1

Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)

Predicted Functional Partners:

OAS42825.1

0.927

OAS42793.1

0.898

OAS42794.1

0.888

OAS42795.1

0.851

OAS42826.1

0.846

OAS42798.1

0.841

OAS43417.1

0.821

OAS43413.1

0.790

OAS43416.1

0.775

OAS43412.1

0.774

Your Current Organism:

Opitutaceae bacterium TAV4

NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OAS42792.1	OAS42793.1	Ga0100231_11580	Ga0100231_11590	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
OAS42792.1	OAS42794.1	Ga0100231_11580	Ga0100231_11595	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
OAS42792.1	OAS42795.1	Ga0100231_11580	Ga0100231_11605	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
OAS42792.1	OAS42798.1	Ga0100231_11580	Ga0100231_11620	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Filamentous hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
OAS42792.1	OAS42825.1	Ga0100231_11580	Ga0100231_11585	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
OAS42792.1	OAS42826.1	Ga0100231_11580	Ga0100231_11600	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
OAS42792.1	OAS43412.1	Ga0100231_11580	Ga0100231_21270	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
OAS42792.1	OAS43413.1	Ga0100231_11580	Ga0100231_21275	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.790
OAS42792.1	OAS43416.1	Ga0100231_11580	Ga0100231_21290	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
OAS42792.1	OAS43417.1	Ga0100231_11580	Ga0100231_21295	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
OAS42793.1	OAS42792.1	Ga0100231_11590	Ga0100231_11580	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
OAS42793.1	OAS42794.1	Ga0100231_11590	Ga0100231_11595	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
OAS42793.1	OAS42795.1	Ga0100231_11590	Ga0100231_11605	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
OAS42793.1	OAS42798.1	Ga0100231_11590	Ga0100231_11620	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Filamentous hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
OAS42793.1	OAS42825.1	Ga0100231_11590	Ga0100231_11585	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
OAS42793.1	OAS42826.1	Ga0100231_11590	Ga0100231_11600	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
OAS42793.1	OAS43412.1	Ga0100231_11590	Ga0100231_21270	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.770
OAS42793.1	OAS43413.1	Ga0100231_11590	Ga0100231_21275	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.770
OAS42793.1	OAS43417.1	Ga0100231_11590	Ga0100231_21295	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
OAS42794.1	OAS42792.1	Ga0100231_11595	Ga0100231_11580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888