STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccoNCytochrome C oxidase Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (796 aa)    
Predicted Functional Partners:
OAS42036.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OAS41911.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OAS41912.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
OAS41495.1
Glucose sorbosone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OAS43122.1
Cytochrome C oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OAS41907.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.998
coxB
Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.998
OAS41906.1
Cytochrome-c oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.997
Ga0100231_02360
Hydrogenase; Frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.996
OAS43561.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.988
Your Current Organism:
Opitutaceae bacterium TAV4
NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.