Ga0100231_22005 protein (Opitutaceae bacterium TAV4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

Coexpression

Experiments

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[Homology]

Score

Ga0100231_22005

Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology. (1540 aa)

Predicted Functional Partners:

OAS43580.1

0.731

OAS41770.1

0.688

OAS43424.1

0.663

OAS42792.1

0.662

OAS43413.1

0.637

OAS43414.1

0.637

OAS42826.1

0.636

OAS42795.1

0.631

OAS42798.1

0.630

OAS41862.1

0.627

Your Current Organism:

Opitutaceae bacterium TAV4

NCBI taxonomy Id: 278959
Other names: O. bacterium TAV4

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ga0100231_22005	OAS41770.1	Ga0100231_22005	Ga0100231_18220	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.688
Ga0100231_22005	OAS41862.1	Ga0100231_22005	Ga0100231_02015	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
Ga0100231_22005	OAS42792.1	Ga0100231_22005	Ga0100231_11580	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
Ga0100231_22005	OAS42795.1	Ga0100231_22005	Ga0100231_11605	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
Ga0100231_22005	OAS42798.1	Ga0100231_22005	Ga0100231_11620	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Filamentous hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
Ga0100231_22005	OAS42826.1	Ga0100231_22005	Ga0100231_11600	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
Ga0100231_22005	OAS43413.1	Ga0100231_22005	Ga0100231_21275	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.637
Ga0100231_22005	OAS43414.1	Ga0100231_22005	Ga0100231_21280	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
Ga0100231_22005	OAS43424.1	Ga0100231_22005	Ga0100231_21300	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
Ga0100231_22005	OAS43580.1	Ga0100231_22005	Ga0100231_20970	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.731
OAS41770.1	Ga0100231_22005	Ga0100231_18220	Ga0100231_22005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
OAS41770.1	OAS41862.1	Ga0100231_18220	Ga0100231_02015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
OAS41770.1	OAS42792.1	Ga0100231_18220	Ga0100231_11580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
OAS41770.1	OAS42795.1	Ga0100231_18220	Ga0100231_11605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
OAS41770.1	OAS42826.1	Ga0100231_18220	Ga0100231_11600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
OAS41770.1	OAS43414.1	Ga0100231_18220	Ga0100231_21280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
OAS41770.1	OAS43424.1	Ga0100231_18220	Ga0100231_21300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hemin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
OAS41770.1	OAS43580.1	Ga0100231_18220	Ga0100231_20970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.759
OAS41862.1	Ga0100231_22005	Ga0100231_02015	Ga0100231_22005	Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
OAS41862.1	OAS41770.1	Ga0100231_02015	Ga0100231_18220	Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.736