Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytpAProbable lysophospholipase YtpA. (259 aa)    
Predicted Functional Partners:
ytpB
Conserved protein YtpB.
 
  
 0.971
glpQ
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.933
yhdW
Glycerophosphoryl diester phosphodiesterase YhdW.
 
  
 0.916
BL05139
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.915
BL02963
Putative Glycerophosphoryl diester phosphodiesterase.
    
 0.903
BL05263
Glycerophosphoryl diester phosphodiesterase.
    
 0.903
yesF
Conserved protein YesF.
  
   0.710
BL07000
Hypothetical protein.
  
   0.710
ytoA
Conserved protein YtoA.
       0.703
dhbF
DhbF.
   
 
 0.621
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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