STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytrATranscriptional regulator YtrA. (130 aa)    
Predicted Functional Partners:
ytrB
ABC transporter YtrB.
 
  
 0.982
ytrF
Possible acetoin transport system substrate binding protein YtrF.
  
  
 0.933
ytrC
Putative permease YtrC.
 
  
 0.932
ytrE
ABC transporter YtrE.
  
  
 0.910
BL00284
ABC transporter.
 
    0.664
BL02723
ABC transporter,ATP/GTP-binding site motif A (P-loop).
 
    0.638
ytzC
Conserved protein YtzC.
       0.496
gntR
Transcriptional regulator.
      
 0.487
ydeL
Hypothetical DNA-binding protein YdeL.
  
     0.472
acuA
Acetoin dehydrogenase; Part of the acuABC operon, which is possibly involved in the breakdown of acetoin and butanediol. Acts as an acetyltransferase inactivating acetyl-CoA synthetase AcsA via acetylation at a Lys residue.
     
 0.461
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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