STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytrFPossible acetoin transport system substrate binding protein YtrF. (443 aa)    
Predicted Functional Partners:
ytrE
ABC transporter YtrE.
 
 
 0.999
ytrB
ABC transporter YtrB.
  
  
 0.969
yknY
ABC transporter.
 
 
 0.940
ytrA
Transcriptional regulator YtrA.
  
  
 0.933
ytrC
Putative permease YtrC.
  
  
 0.903
BL00274
ABC transporter.
 
   0.864
yclH
ABC transporter YclH.
 
   0.767
ydcC
Conserved membrane protein YdcC.
   
 
 0.750
BL00257
ABC transport system ATP-binding protein.
 
 
 0.738
yxdL
ABC transporter.
 
 
 0.722
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.