STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytaPPutative endopeptidase YtaP. (295 aa)    
Predicted Functional Partners:
ytcQ
Putative multiple sugar transport system substrate-binding protein YtcQ.
 
    0.817
ytbQ
YtbQ.
       0.753
yecA
Probable amino acid permease YecA.
       0.675
BL03024
Putative extracellular solute-binding protein, family 1.
 
    0.667
lplA
Lipoprotein.
 
    0.611
ytdP
Putative transcriptional regulator YtdP.
  
     0.546
yoxA
Conserved hypothetical protein.
  
  
  0.537
dhbF
DhbF.
    
 0.533
ytcP
Putative multiple sugar transport system permease protein YtcP.
 
     0.524
yesR
Conserved protein YesR.
 
  
  0.473
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.