STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yteRUnsaturated rhamnogalacturonyl hydrolase. (373 aa)    
Predicted Functional Partners:
BL00713
Glycoside Hydrolase Family 28; Belongs to the glycosyl hydrolase 28 family.
     0.963
BL03022
Glycoside Hydrolase Family 43; Similar to xynB from Bacillus subtilis; Belongs to the glycosyl hydrolase 43 family.
     0.911
yteT
Putative oxidoreductase YteT.
 
  
  0.907
yteS
Conserved protein YteS.
  
    0.844
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.816
yesT
Putative carbohydrate esterase, Family 12, YesT.
 
 
  0.806
BL00567
Carbohydrate Esterase Family 12, putative beta-tubulin.
 
  
  0.804
BL03784
Putative carbohydrate esterase Family 12.
 
 
  0.804
yesY
Carbohydrate esterase, Family 12 YesY.
 
 
  0.802
BL00023
Putative transmembrane lipoprotein.
  
    0.792
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.