STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rapAResponse regulator aspartate phosphatase. (317 aa)    
Predicted Functional Partners:
BL05244
Response regulator aspartate phosphatase.
  
  
 
0.925
spo0F
Two-component response regulator.
    
 0.923
BL00365
Hypothetical protein.
  
     0.686
BL00029
Hypothetical protein.
 
    0.614
yqeB
Ribosomal protein L29.
  
     0.515
yvbI
YvbI.
  
     0.488
BL02722
Hypothetical protein.
  
     0.477
ywoF
Polysaccharide Lyase Family 9,YwoF.
  
     0.448
ydaH
Conserved membrane protein YdaH; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
  
     0.445
ytwF
Conserved protein YtwF.
  
    0.439
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.