STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytgPPossible polysaccharide transporter YtgP. (542 aa)    
Predicted Functional Partners:
ytzF
Putative Pseudouridine synthase YtzF; Belongs to the pseudouridine synthase RsuA family.
  
    0.759
ezrA
EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family.
  
     0.694
yrzL
Conserved protein YrzL; Belongs to the UPF0297 family.
  
     0.672
yerH
YerH.
  
    0.635
pbpH
Penicillin-binding Protein dimerisation domain.
 
  
 0.600
ytxK
Putative RNA methylase YtxK.
  
    0.582
pbpA
Penicillin-binding protein 2A.
 
  
 0.566
yazC
Putative Ribonuclease III, conserved hypothetical YazC protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
     0.562
yvcL
Conserved protein YvcL; Involved in cell division and chromosome segregation.
  
     0.561
yneF
Conserved hypothetical protein YneF.
  
     0.550
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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