STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ytlP2'_5' RNA ligase YtlP; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (201 aa)    
Predicted Functional Partners:
ytlQ
Conserved protein YtlQ.
  
    0.849
ytlR
Conserved protein YtlR.
 
     0.781
yjcG
Conserved protein YjcG; Belongs to the 2H phosphoesterase superfamily. YjcG family.
      
 0.779
amyX
Putative pullulanase, Glycoside Hydrolase Family 13, AmyX; Belongs to the glycosyl hydrolase 13 family.
       0.697
ytkP
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
       0.680
ytmP
YtmP.
       0.556
cinA
Competence-damage inducible protein; Belongs to the CinA family.
     
 0.528
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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