STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytlQConserved protein YtlQ. (313 aa)    
Predicted Functional Partners:
ytlP
2'_5' RNA ligase YtlP; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
  
    0.849
fliJ
Flagellar protein.
  
     0.774
ylxL
Conserved hypothetical protein.
  
     0.772
fliZ
Flagellar protein.
  
    0.772
ytlR
Conserved protein YtlR.
  
    0.766
yjbA
Conserved protein YjbA; Belongs to the UPF0736 family.
  
     0.749
yjbH
Conserved protein YjbH; Belongs to the UPF0413 family.
  
     0.748
ysoA
Conserved protein YsoA.
  
     0.746
ylaI
YlaI.
  
     0.746
yvyG
YvyG.
  
     0.737
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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