STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytmPYtmP. (271 aa)    
Predicted Functional Partners:
tagD
Glycerol-3-phosphate cytidylyltransferase.
     
 0.665
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
  
  
 0.644
ydiL
Aldo/keto reductase; Putative membrane-bound metalloprotease.
  
     0.624
yjbH
Conserved protein YjbH; Belongs to the UPF0413 family.
  
     0.610
BL00458
Hypothetical protein.
   
 
 0.583
ytlQ
Conserved protein YtlQ.
 
     0.539
amyX
Putative pullulanase, Glycoside Hydrolase Family 13, AmyX; Belongs to the glycosyl hydrolase 13 family.
       0.530
yjbA
Conserved protein YjbA; Belongs to the UPF0736 family.
  
     0.516
yjbK
Conserved protein YjbK.
  
     0.513
tenA
Transcriptional regulator; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway; Belongs to the TenA family.
   
 
  0.511
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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