STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytmPYtmP. (271 aa)    
Predicted Functional Partners:
ytlQ
Conserved protein YtlQ.
 
     0.639
amyX
Putative pullulanase, Glycoside Hydrolase Family 13, AmyX; Belongs to the glycosyl hydrolase 13 family.
       0.632
ydiL
Aldo/keto reductase; Putative membrane-bound metalloprotease.
  
     0.624
yjbH
Conserved protein YjbH; Belongs to the UPF0413 family.
  
     0.610
ytlR
Conserved protein YtlR.
       0.605
ytlP
2'_5' RNA ligase YtlP; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.556
yjbA
Conserved protein YjbA; Belongs to the UPF0736 family.
  
     0.516
yjbK
Conserved protein YjbK.
  
     0.513
ykzG
Conserved hypothetical protein YkzG; Belongs to the UPF0356 family.
  
     0.502
ypsB
Conserved hypothetical protein YpsB; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.
  
     0.492
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.