STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytnPBeta-lactamase-like protein YtnP. (281 aa)    
Predicted Functional Partners:
yrkF
YrkF; Belongs to the sulfur carrier protein TusA family.
  
 0.838
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
   
 
  0.717
malS
Malate dehydrogenase (decarboxylating).
  
    0.688
ytmQ
Putative methyltransferase YtmQ; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.595
bcsA
Naringenin-chalcone synthase.
  
 
   0.499
dhbF
DhbF.
   
 
 0.468
BL00160
Hypothetical Bipartite response regulator, C-terminal effector.
    
   0.461
lchAA
Lichenysin synthetase A.
    
 
 0.457
ytzB
Conserved protein YtzB.
  
     0.455
ytzH
YtzH.
       0.451
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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