STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytpQConserved protein YtpQ; Belongs to the UPF0354 family. (269 aa)    
Predicted Functional Partners:
ytpR
Putative tRNA binding protein YtpR; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.867
ytxG
Conserved protein YtxG.
 
     0.831
ytpP
Putative thioredoxin YtpP.
  
    0.816
ytkD
Putative hydrolase YtkD; Belongs to the Nudix hydrolase family.
  
     0.768
yfhP
Predicted membrane-bound metal-dependent hydrolase; Negative regulator of yfhQ, fabL, sspE and yfhP.
  
     0.762
comK
Competence transcription factor ComK.
  
     0.760
yisL
Conserved membrane protein.
  
     0.742
ylaI
YlaI.
  
     0.741
yjbH
Conserved protein YjbH; Belongs to the UPF0413 family.
  
     0.735
ezrA
EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family.
  
     0.717
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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