STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytqBConserved protein YtqB. (194 aa)    
Predicted Functional Partners:
ytqA
Conserved hypothetical protein YtqA.
 
    0.950
mraZ
Conserved protein MraZ; Belongs to the MraZ family.
  
  
 0.819
truA
Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.754
yrkH
Conserved protein YrkH.
   
   0.743
BL02060
Metallo-beta-lactamase/rhodanese-like domain protein.
   
   0.743
ytzC
Conserved protein YtzC.
       0.676
nifZ
NifZ.
   
  
 0.657
yrrM
SAM-dependent methyltransferase YrrM.
  
  
 0.634
yrrN
Calcium-binding protein YrrN.
  
  
 0.630
yrrO
Putative protease YrrO.
  
  
 0.613
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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