STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytdPPutative transcriptional regulator YtdP. (769 aa)    
Predicted Functional Partners:
ytcQ
Putative multiple sugar transport system substrate-binding protein YtcQ.
  
     0.761
BL03024
Putative extracellular solute-binding protein, family 1.
  
     0.755
lplA
Lipoprotein.
  
     0.751
cheA
Two-component sensor histidine kinase CheA.
  
 
 0.750
BL00023
Putative transmembrane lipoprotein.
 
     0.692
yesU
YesU.
  
     0.671
xkdO
Hypothetical phage related protein.
  
     0.654
yteU
Conserved membrane protein YteU.
 
     0.593
ytaP
Putative endopeptidase YtaP.
  
     0.546
fliM
Flagellar motor switch protein; One of the proteins that forms a switch complex that is proposed to be located at the base of the basal body. This complex interacts with chemotaxis proteins (such as CheY) in addition to contacting components of the motor that determine the direction of flagellar rotation; Belongs to the FliM family.
  
 
 0.546
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.