STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytoQNucleoside 2-deoxyribosyltransferase YtoQ. (148 aa)    
Predicted Functional Partners:
ytkA
Conserved protein YtkA.
  
     0.596
yuiB
Conserved membrane protein YuiB.
  
     0.523
ytpP
Putative thioredoxin YtpP.
       0.492
ytpQ
Conserved protein YtpQ; Belongs to the UPF0354 family.
     
 0.482
ypiF
Hypothetical protein.
  
     0.460
yfkN
Putative nucleotidase YfkN.
 
  
  0.450
ygzB
Hypothetical protein.
  
     0.448
ytpR
Putative tRNA binding protein YtpR; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.447
yuaD
Hypothetical protein.
 
     0.419
yqgY
Conserved protein YqgY.
  
     0.411
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.