STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvoAPutative transcriptional regulator (GntR family) YvoA. (243 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase (Carbohydrate esterase Family 9).
 
  
 0.942
nagB
N-acetylglucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
  
  
 0.874
murQ2
Hypothetical protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
       0.846
nagP
Phosphotransferase system (PTS) N-acetylglucosamine-specific enzyme IICB component.
  
  
 0.799
BL03053
Probable transcriptional regulator (AraC/XylS family).
  
  
 0.651
ypqE
Putative PTS system IIA component.
 
   
 0.601
gntR
Transcriptional regulator.
  
   
 0.530
yflS
Putative 2-oxoglutarate/malate translocator.
     
 0.515
yvfI
Probable transcriptional regulator YvfI.
  
    0.504
sigY
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-Y); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.473
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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